PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g29500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 487aa    MW: 54439.4 Da    PI: 8.3201
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g29500genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-0594113221
                 EETTTTEEESSHHHHHHHHH CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                 +C+ CgksF+++  L  H++
  CA03g29500  94 VCKECGKSFPSWKALFGHMK 113
                 6******************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.4111234IPR007087Zinc finger, C2H2
PfamPF139122.6E-51235IPR007087Zinc finger, C2H2
SuperFamilySSF576671.76E-91234No hitNo description
SMARTSM003550.681234IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801434IPR007087Zinc finger, C2H2
SuperFamilySSF576671.76E-988115No hitNo description
PROSITE profilePS5015710.38893120IPR007087Zinc finger, C2H2
SMARTSM003550.002393115IPR015880Zinc finger, C2H2-like
PfamPF139127.3E-995117IPR007087Zinc finger, C2H2
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
SuperFamilySSF576677.9E-5316348No hitNo description
PROSITE profilePS5015710.221318345IPR007087Zinc finger, C2H2
PfamPF139122.0E-8318341IPR007087Zinc finger, C2H2
SMARTSM003553.6318340IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280320340IPR007087Zinc finger, C2H2
PfamPF139123.0E-10390413IPR007087Zinc finger, C2H2
PROSITE profilePS501578.787390412IPR007087Zinc finger, C2H2
SMARTSM003550.19390412IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280392412IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MGEDQEVVVL KHVCKFCNKS FHCGRSLGGH MRSHMITTTD GETSRKKLPA LIISNVDLDM  60
GTQSANYGLR ENPKKTSKFD QDDALLPNQN NNKVCKECGK SFPSWKALFG HMKCHSSSMN  120
NSVEEDSWNS GKQLVLMDSE SDTEAAAAAP NKKKRSSRKM MKRYMVPTTS SSLTVGANAS  180
PCVSEIEHEQ EEIAMSLIML SRDVGNWVGQ NHVTECSDNN SQFLQSSSRL STKCKDDSGG  240
DLVKLIKKVK NGKTEQGECS KSPTNGQKRD KSQLPTDHKF LGDEKKKKIK VDNEHRVVEI  300
LPKEMDPDPR ENSSKIKFEC TTCNRSFHCY QALGGHRASH KNTKVGNCTS IDIDHHVKQI  360
KNFSNESGIN EFALKIDNNC GSKKQQLKMH ECPICFKIFP SGQALGGHKR SHLIAEAKRN  420
NNNNNNQSVE VHKPVPEIRN FLDLNLPAPV EEDTMLDSSS TEHIEFKQWW IDSSHKHEQL  480
LGLLSS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016563304.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLM1CA320.0M1CA32_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000631110.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44812241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.11e-33C2H2-like zinc finger protein